Starfish Research Articles

Local and global changes in cell density induce reorganisation of 3D packing in a proliferating epithelium.

Tissue morphogenesis is intimately linked to the changes in shape and organisation of individual cells. In curved epithelia, cells can intercalate along their own apicobasal axes adopting a shape named "scutoid" that allows energy minimization in the tissue. Although several geometric and biophysical factors have been associated with this 3D reorganisation, the dynamic changes underlying scutoid formation in 3D epithelial packing remain poorly understood. Here we use live-imaging of the sea star embryo coupled with deep learning-based segmentation, to dissect the relative contributions of cell density, tissue compaction, and cell proliferation on epithelial architecture. We find that tissue compaction, which naturally occurs in the embryo, is necessary for the appearance of scutoids. Physical compression experiments identify cell density as the factor promoting scutoid formation at a global level. Finally, the comparison of the developing embryo with computational models indicates that the increase in the proportion of scutoids is directly associated with cell divisions. Our results suggest that apico-basal intercalations appearing just after mitosis may help accommodate the new cells within the tissue. We propose that proliferation in a compact epithelium induces 3D cell rearrangements during development.

Noble hosts: effects of internal parasites on the physiology of an intertidal brooding Sea-star

Introduction: The endoparasite Dendrogaster argentinensis infects the intertidal brooder sea star Anasterias antarctica. This sea-star species is in the highest trophic level in the Beagle Channel.
 Objective: To study the effects of parasitism by D. argentinensis on the fitness and reproduction of A. antarctica.
 Methods: Adults from the brooder sea-star were collected from the rocky intertidal of Ensenada Zaratiegui bay (54°51’ S & 68°29’ W), Argentina. Eight seasonal samplings were performed (four seasons in two years) in the upper and low intertidal. During dissection, parasites were removed, and all organs were extracted and weighed separately.
 Results: Dendrogaster argentinensis prevalence was the highest for the region (20.4 %). Parasitized individuals were more frequent in the low intertidal in all seasons, with a higher difference in summer, where it is likely that the higher temperatures and strong winds could make the upper intertidal more challenging for a parasitized individual. Five parasitized individuals were castrated. Generally, the gonadal (GI) and somatic (pyloric caeca, PCI; stomach, SI; body wall, WI) indexes were lower in parasitized than non-parasitized individuals.
 Conclusions: Parasitism by D. argentinensis negatively affects A. antarctica condition. It affects reproduction because it reduces the GI, and can also produce castration. The parasite competes for the sea-stars’ energetic resources, also decreasing the individual’s capacity for feeding (reduced stomach) and growth (reduced body wall).

First report in the fossil record of a shark tooth embedded in a pinniped bone

There are now many examples in the fossil record of shark bite marks preserved on biogenic materials including coprolites, ammonoids, sea star ossicles, an echinoid, and bone and calcified cartilage. These exceptional fossils document evidence of exploratory behavior, active predation, and/or scavenging. However, only a small subset report on the presence of shark teeth embedded in fossilized bone or cartilage. Although a few shark tooth-marked seal bones are known from the fossil record, no direct evidence of predation or scavenging in the form of a shark tooth embedded in a fossil seal bone has yet been documented. Herein, we describe the first shark tooth embedded in a seal (Phocidae Gray, 1821) bone, a calcaneum (CMM-V-6964), that was surface collected in Mosaic’s South Fort Meade Mine, Hardee County, Fort Meade, Florida, United States. The isolated bone originated from within the Bone Valley Member of the Peace River Formation (Hawthorn Group). The partial tooth is identified as having come from an Early Pliocene great white shark, Carcharodon carcharias (Linnaeus, 1758). This discovery also represents the first C. carcharias tooth ever found embedded in a fossil bone. The embedded tooth may have come about as a result of active predation or scavenging. The extant macropredatory sharks, Carcharodon carcharias (great white shark), Notorynchus cepedianus (Péron, 1807) (sevengill shark), Somniosus microcephalus (Bloch & Schneider, 1801) (the Greenland shark), and Somniosus antarcticus Whitley, 1939 (sleeper shark), are known to actively prey upon seals (Pinnipedia Illiger, 1811). If this peculiar fossil association resulted from active predation, the seal did not survive the encounter because there is no evidence of healing in the area around the embedded shark tooth.

High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator.

Lewontin's paradox, the observation that levels of genetic diversity (π) do not scale linearly with census population size (Nc) variation, is an evolutionary conundrum. The most extreme mismatches between π and Nc are found for highly abundant marine invertebrates. Yet, the influences of new mutations on π relative to extrinsic processes such as Nc fluctuations are unknown. Here, we provide the first germline mutation rate (μ) estimate for a marine invertebrate in corallivorous crown-of-thorns sea stars (Acanthaster cf. solaris). We use high-coverage whole-genome sequencing of 14 parent-offspring trios alongside empirical estimates of Nc in Australia's Great Barrier Reef to jointly examine the determinants of π in populations undergoing extreme Nc fluctuations. The A. cf. solaris mean μ was 9.13 x 10-09 mutations per-site per-generation (95% CI: 6.51 x 10-09 to 1.18 x 10-08), exceeding estimates for other invertebrates and showing greater concordance with vertebrate mutation rates. Lower-than-expected Ne (~70,000-180,000) and low Ne/Nc values (0.0047-0.048) indicated weak influences of population outbreaks on long-term π. Our findings are consistent with elevated μ evolving in response to reduced Ne and generation time length, with important implications for explaining high mutational loads and the determinants of genetic diversity in marine invertebrate taxa.

Development and Testing of Species-Specific Primers for Detecting the Presence of the Northern Pacific Sea Star (Asterias amurensis) from Environmental DNA

Development and Testing of Species-Specific Primers for Detecting the Presence of the Northern Pacific Sea Star (Asterias amurensis) from Environmental DNA

Three new species of sea star parasite Dendrogaster (Crustacea: Thecostraca) from Japan.

Three new species of ascothoracidan crustaceans, Dendrogaster danni sp. nov., Dendrogaster tanabensis sp. nov., and Dendrogaster jinshomaruae sp. nov. are described from the sea around the Kii Peninsula on the Pacific coast of central Japan. They are found in the coelomic cavities of the sea stars, Neoferdina japonica Oguro & Misaki, 1986., Henricia sp., and Coronaster volsellatus (Sladen, 1889), respectively. Morphological examinations and DNA barcoding analyses of these new species are reported in this study. The emergence of Dendrogaster from their host sea stars is also noted. These findings represent the 11th to 13th species of Dendrogaster that infest Japanese sea stars.

Classification and Immune Function of Coelomocytes in Echinoderms

Abstract: The top taxonomic position among non-chordate invertebrates, which make up the evolutionary connection between invertebrates and vertebrates, is held by echinoderms. Their immune responses rely on coelomocyte activity functioning concurrently with a range of humoral components that directly interact with invasive pathogens. However, markedly lower numbers of systematic reviews of the classification and immune function of coelomocytes have been performed compared with those of vertebrates. Studying echinoderm coelomocytes continues to be an important evolutionary vantage point for determining the origins of bilaterian immunity as well as the principles behind the adaptive immune system of vertebrates. This article reviews the classifications and immune functions of coelomocytes (sea urchin, sea cucumber and sea star). It summarizes the research progress on immune-related genes/proteins, signal transduction pathways and effector molecules in echinoderms according to the recent literature. This summary provides a theoretical basis for studying coelomocytes and disease control in echinoderms. In the future, a variety of methods and techniques should be used and combined with the surface receptors of cells to study the classification and function of coelomocytes of echinoderms.

De Novo Genome Assembly of the Sea Star Patiria pectinifera (Muller & Troschel, 1842) Using Oxford Nanopore Technology and Illumina Platforms

The sea star Patiria pectinifera (Asteroidea; Asterinidae; homotypic synonym: Asterina pectinifera; Muller & Troschel, 1842) is widely distributed in the coastal regions of the Seas of East Asia and the northern Pacific Ocean. Here, a de novo genome sequence of P. pectinifera as a reference for fundamental and applied research was constructed by employing a combination of long-read Oxford Nanopore Technology (ONT) PromethION, short-read Illumina platforms, and 10 × Genomics. The draft genome of P. pectinifera, containing 13,848,344 and 156,878,348 contigs from ONT and Illumina platforms, respectively, was obtained. Assembly with CANU resulted in 2262 contigs with an N50 length of 367 kb. Finally, ARCS + LINKS assembly combined these contigs into 328 scaffolds, totaling 499 Mb with an N50 length of 2 Mbp. The estimated genome size by GenomeScope analysis was 461 Mb. BUSCO analysis indicated that 930 (97.5%) of the expected genes were found in the assembly, with 889 (93.2%) being single-copy and 41 (4.3%) duplicated after searching against the metazoan database. Annotation, utilizing sequences obtained from Illumina RNA-Seq and Pacific Biosciences Iso-Seq, led to the identification of 22,367 protein-coding genes. When examining the orthologous relationship of P. pectinifera against the scaffolds of the common sea star Patiria miniata, high contiguity was observed. Annotation of repeat elements highlighted an enrichment of 1,121,079 transposable elements, constituting 47% of the genome, suggesting their potential role in shaping the genome structure of P. pectinifera. This de novo genome assembly is expected to be a valuable resource for future studies, providing insight into the developmental, environmental, and ecological aspects of P. pectinifera biology.

Validitas Modul Ekologi Berdasarkan Hasil Identifikasi Jenis Bintang Laut (Asteroidea)

Modules can help educators achieve quality learning. The application of modules can condition learning activities to be more well planned, independent, complete, and with clear results (output). This research aims to test the feasibility of the ecological module based on the results of identifying types of sea stars (Asteroidea). The type of research used is development research. The research sample used was 15 students of the Department of Biology Education, Faculty of Applied Science and Engineering, Mandalika University of Education. Data collection techniques include validation and readability testing. The data analysis technique used is the percentage technique. Based on the research results, it was explained that the development of the ecology module was validated by a team of experts (material, language and appearance), and the student readability test obtained an average of 74.1% and the readability test was 87.8%. It was concluded that the ecological module developed was declared quite valid without needing revision and was very readable.

Keanekaragaman Bintang Laut (Asteroidea) di Pantai Awang Kabupaten Lombok Tengah

This research aims to determine the diversity index of sea stars at Awang Beach, Central Lombok Regency. Starfish play an important role in the lives of living creatures. However, the existence of Starfish in each region is increasingly experiencing damage due to pollution and human activities. The type of research used is comparative descriptive research. Data collection techniques are in the form of direct observation and documentation. Based on the research results, it was found that there were five types of Starfish found in the waters of Awang Beach, Central Lombok Regency, including: Protoreaster nodus, Linckia leavigata, Archaster typhicus, Culcita novaeguineae, and Henricia leviuscula. Sampling was carried out at three station points, namely station I, station II and station III, using the quadrant transect method. The research results showed that the starfish diversity index at the three station points was 0.1590 in the low category.

Numerical simulation of particles beneath a towed circular cylinder

This study investigates particle dynamics around a towed circular cylinder near a wall. The flow field obtained from a numerical model based on the Reynolds-Average Navier–Stokes equations is utilized to estimate the particle trajectories computed using a Lagrangian approach. The simulated flow resembles a towed fishing gear and the particles which represent sea stars, muscles, and sediments are seeded at the seabed. The ejection of particles from the seabed is related to the upward flow induced by lee-wake vortex shedding. The effect of the gap between the cylinder and the seabed is investigated, where an increased distance leads to fewer ejected particles and distinct trajectories. Furthermore, for the same relative distance to the seabed, a larger diameter cylinder, and hence a different relative initial position and Reynolds number, leads to fewer ejected particles. The optimal position of the fishing net of a towed fishing gear relative to the cylinder is investigated based on the trajectories.

Identification of potential antiviral compounds from Egyptian sea stars against seasonal influenza A/H1N1 virus

BackgroundOne of the most dangerous problems that the world faced recently is viral respiratory pathogens. Marine creatures, including Echinodermata, specially Asteroidea class (starfish) have been extensively studied due to their miscellaneous bioactivities, excellent pharmacological properties, and complex secondary metabolites, including steroids, steroidal glycosides, anthraquinones, alkaloids, phospholipids, peptides, and fatty acids. These chemical constituents show antiviral activities against a wide range of viruses, including respiratory viruses. ResultsThe present study aimed at the identification of potential antiviral compounds from some starfish species. The bioactive compounds from Pentaceraster cumingi, Astropecten polyacanthus, and Pentaceraster mammillatus were extracted using two different solvents (ethyl acetate and methanol). The antiviral activity against influenza A/H1N1 virus showed that ethyl acetate extract from Pentaceraster cumingi has the highest activity, where the selective index was 150.8. The bioactive compounds of this extract were identified by GC/MS analysis. The molecular docking study highlighted the virtual mechanism of binding of the identified compounds towards polymerase basic protein 2 and neuraminidase for H1N1 virus. Interestingly, linoleic acid showed promising binding energy of −10.12 Kcal/mol and −24.20 Kcal/mol for the selected two targets, respectively, and it formed good interactive modes with the key amino acids inside both proteins. ConclusionThe molecular docking analysis showed that linoleic acid was the most active antiviral compound from P. cumingi. Further studies are recommended for in-vitro and in-vivo evaluation of this compound against influenza A/H1N1 virus.

Rare Ophiuroid-Type Steroid 3β,21-, 3β,22-, and 3α,22-Disulfates from the Slime Sea Star Pteraster marsippus and Their Colony-Inhibiting Effects against Human Breast Cancer Cells.

Two new steroid 3β,21-disulfates (1, 2) and two new steroid 3β,22- and 3α,22-disulfates (3, 4), along with the previously known monoamine alkaloid tryptamine (5) were found in the ethanolic extract of the Far Eastern slime sea star Pteraster marsippus. Their structures were determined on the basis of detailed analysis of one-dimensional and two-dimensional NMR, HRESIMS, and HRESIMS/MS data. Compounds 1 and 2 have a Δ22-21-sulfoxy-24-norcholestane side chain. Compounds 3 and 4 contain a Δ24(28)-22-sulfoxy-24-methylcholestane side chain, which was first discovered in the polar steroids of starfish and brittle stars. The influence of substances 1-4 on cell viability, colony formation, and growth of human breast cancer T-47D, MCF-7, and MDA-MB-231 cells was investigated. It was shown that compounds 1 and 2 possess significant colony-inhibiting activity against T-47D cells, while compounds 3 and 4 were more effective against MDA-MB-231 cells.

An open‐source general purpose machine learning framework for individual animal re‐identification using few‐shot learning

Abstract Animal re‐identification remains a challenging problem due to the cost of tagging systems and the difficulty of permanently attaching a physical marker to some animals, such as sea stars. Due to these challenges, photo identification is a good fit to solve this problem whether evaluated by humans or through machine learning. Accurate machine learning methods are an improvement over manual identification as they are capable of evaluating a large number of images automatically and recent advances have reduced the need for large training datasets. This study aimed to create an accurate, robust, general purpose machine learning framework for individual animal re‐identification using images both from publicly available data as well as two groups of sea stars of different species under human care. Open‐source code was provided to accelerate work in this space. Images of two species of sea star (Asterias rubens and Anthenea australiae) were taken using a consumer‐grade smartphone camera and used as original datasets to train a machine learning model to re‐identify an individual animal using few examples. The model's performance was evaluated on these original sea star datasets which contained between 39–54 individuals and 983–1204 images, as well as using six publicly available re‐identification datasets for tigers, beef cattle noses, chimpanzee faces, zebras, giraffes and ringed seals ranging between 45–2056 individuals and 829–6770 images. Using time aware‐splits, which are a data splitting technique ensuring that the model only sees an individual's images from a previous collection event during training to avoid information leaking, the model achieved high (>99%) individual re‐identification mean average precision for the top prediction (mAP@1) for the two species of sea stars. The re‐identification mAP@1 for the mammalian datasets was more variable, ranging from 83% to >99%. However, this model outperformed published state‐of‐the‐art re‐identification results for the publicly available datasets. The reported approach for animal re‐identification is generalizable, with the same machine learning framework achieving good performance in two distinct species of sea stars with different physical attributes, as well as seven different mammalian species. This demonstrates that this methodology can be applied to nearly any species where individual re‐identification is required. This study presents a precise, practical, non‐invasive approach to animal re‐identification using only basic image collection methods.

Feeding rates and carbon and nitrogen partitioning in crown-of-thorns sea star larvae (Acanthaster cf. solaris) during development

Crown-of-thorns sea star (CoTS; Acanthaster cf. solaris) outbreaks are a significant cause of coral decline. Enhanced food supply for the larvae via eutrophication is implicated as a cause of outbreaks, yet larval feeding ecology is poorly understood. In this study, feeding experiments were carried out at two algal food concentrations of 1000 cells mL−1 (~ 1.52 µg chl a L−1) and 3000 cells mL−1 (~ 4.56 µg chl a L−1) across six successive larval stages to investigate the effect of food concentration on filtration rate and ingestion rate for these stages. Filtration rate increased with larval stage and more than tripled from 127 ± 32 µL larva−1 h−1 (mean ± SE) of the youngest (2–3 dpf) larvae to 497 ± 109 µL larva−1 h−1 at late brachiolaria stage (9–10 dpf). Ingestion rate increased with food concentration and larval age, with advanced brachiolaria larvae consuming 313.5 ± 39.1 cells larva−1 h−1 in the higher algal food treatment. Organic carbon (C) and nitrogen (N) measured in larvae and their food indicated that the youngest feeding larvae ingested 13% their body carbon content daily, with that number almost doubling to 24% by advanced bipinnaria stage. The C/N ratio decreased sharply for brachiolaria larvae, reflecting developmental changes and greater dependence on exogenous nutrition. These results add to our understanding of the role food concentration plays in the growth and survivorship of CoTS larvae in the field.

Topanga: A kinetic ion plasma code for large-scale ionospheric simulations on magnetohydrodynamic timescales

Topanga is a kinetic ion code developed for simulating large-scale plasma phenomena in the Earth's ionosphere on magnetohydrodynamic timescales. It is a domain-decomposed parallel code that runs on high-performance computing platforms. Features of Topanga include spherical geometry for simplified boundary conditions and computational efficiency; a hybrid plasma model with inertia-less fluid electrons, kinetic ions, and an electric field specified via an Ohm's law; a Maxwell-FDTD (finite difference time domain) plasma model which retains the displacement current in Maxwell's equations and models electron currents in the ionosphere with a tensor conductivity; sponge-layer boundary conditions for absorption of electromagnetic and plasma waves incident on the domain boundaries; and a novel mixed-implicit algorithm for evolving the EM fields inside the Maxwell-FDTD region that is stable over many orders of magnitude in the electron–ion collision frequency. We verify the numerical methods used in Topanga on a pair of test problems. The first test involves modeling a three-dimensional collisionless shock using the hybrid set of equations. The second test involves modeling a spherical TEM mode in vacuum using the Maxwell-FDTD set of equations. Finally, we demonstrate how using the combined set of hybrid and Maxwell-FDTD equations to model the Starfish Prime high-altitude nuclear test recovers a “missing” EM signal on the ground that is not present when using only the hybrid set of equations. The magnitude of this signal in the simulation containing the Maxwell-FDTD region agrees well with the E3a portion of the magnetohydrodynamic electromagnetic pulse from Starfish Prime.

Determination of the CDR (CDR1, CDR2) « Complementary- Determining Region Invertebrate Primitive Antibody from Sea Star »

The IPA (Invertebrate Primitive Antibody) was recently discovered, in the same time of Asterias rubens lymphocytes, humoral specific immune responses and Genomic assays with the sea star IGKappa gene. or anti Horse-radish peroxidase. CDR1 and CDR2 were described in this paper. That corroborates the name of Invertebrate Primitive Antibody and not IG Like protein as it is thought by some people.

New Rare Triterpene Glycosides from Pacific Sun Star, Solaster pacificus, and Their Anticancer Activity.

Six previously unknown triterpene glycosides, pacificusosides L-Q (1-6), and two previously known triterpene glycosides, cucumariosides B1 (7) and A5 (8), were isolated from an alcoholic extract of Pacific sun star, Solaster pacificus. The structures of 1-6 were determined using 1D and 2D NMR, ESIMS, and chemical modifications. Compound 1 is a rare type of triterpene glycoside with non-holostane aglycon, having a linear trisaccharide carbohydrate chain. Pacificusosides M-P (2-5) have new structures containing a Δ8(9)-3,16,18-trihydroxy tetracyclic triterpene moiety. This tetracyclic fragment in sea star or sea cucumber triterpene glycosides was described for the first time. All the compounds under study exhibit low or moderate cytotoxic activity against colorectal carcinoma HCT 116 cells, and breast cancer MDA-MB-231 cells were assessed by MTS assay. Compound 2 effectively suppresses the colony formation of cancer cells at a non-toxic concentration, using the soft-agar assay. A scratch assay has shown a significant anti-invasive potential of compound 2 against HCT 116 cells, but not against MDA-MB-231 cells.

Annelids as models of germ cell and gonad regeneration.

Germ cells (reproductive cells and their progenitors) give rise to the next generation in sexually reproducing organisms. The loss or removal of germ cells often leads to sterility in established research organisms such as the fruit fly, nematodes, frog, and mouse. The failure to regenerate germ cells in these organisms reinforced the dogma of germline-soma barrier in which germ cells are set-aside during embryogenesis and cannot be replaced by somatic cells. However, in stark contrast, many animals including segmented worms (annelids), hydrozoans, planaria, sea stars, sea urchins, and tunicates can regenerate germ cells. Here I review germ cell and gonad regeneration in annelids, a rich history of research that dates back to the early 20th century in this highly regenerative group. Examples include annelids from across the annelid phylogeny, across developmental stages, and reproductive strategies. Adult annelids regenerate germ cells as a part of regeneration, grafting, and asexual reproduction. Annelids can also recover germ cells after ablation of germ cell progenitors in the embryos. I present a framework to investigate cellular sources of germ cell regeneration in annelids, and discuss the literature that supports different possibilities within this framework, where germ-soma separation may or may not be preserved. With contemporary genetic-lineage tracing and bioinformatics tools, and several genetically enabled annelid models, we are at the brink of answering the big questions that puzzled many for over more than a century.

Presence Of Plasmocytes in Non-Immunized A. Rubens Sea Stars

Presence Of Plasmocytes in Non-Immunized A. Rubens Sea Stars